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    Lemon Blueberry Muffins (gluten free!)

    Modified: May 19, 2026 · Published: Mar 9, 2025 by Ali Ellis, MSc., RD ·

    Jump to Recipe Print Recipe

    These simple gluten-free Lemon Blueberry Muffins are absolutely bursting with refreshing citrus flavour! These are the perfect toddler muffin. They are soft, high in fibre, and made with simple, wholesome ingredients. They make a great breakfast or snack option and they freeze well, making them a convenient choice for busy parents.

    Lemon blueberry muffins on white plate with cut up lemon.

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    I love having a go-to gluten-free muffin recipe on hand, and this is it! It is a such a simple recipe, using oat flour and almond flour, and maintains an excellent texture!

    Why You'll Love These Lemon Blueberry Muffins for Toddlers

    • Easy muffin for your little one to help with: Let your child help stir the batter, pour the blueberries in, or scoop out into the muffin pan
    • Gluten-free: These recipes are gluten-free using a combination of oat and almond flour
    • Delicious blueberry-lemon combo: The lemon zest in these muffins paired with the blueberries is such a great flavour combo!
    Table of Contents
    • Why You'll Love These Lemon Blueberry Muffins for Toddlers
    • Ingredients
    • Instructions for Gluten-free Lemon Blueberry Muffins
    • Variations
    • Equipment
    • Storage
    • Delicious Lemon Blueberry Muffins - Perfect for Toddlers!
    • FAQ
    • Recipe
    • Related

    Ingredients

    Here is what you will need to make these lemon blueberry muffins!

    Ingredients for lemon blueberry muffins on white marble countertop.
    • Eggs - provide structure and help bind everything together
    • Almond milk - Use any milk you like. This helps add moisture and richness to keep the muffins fluffy and never dry.
    • Maple syrup - to add just a touch of sweetness!
    • Coconut oil - keeps the muffins moist and adds a subtle richness
    • Lemon juice & zest - brighten up the whole muffin with fresh, bright flavour
    • Vanilla - rounds out the flavour and makes these smell absolutely amazing straight out of the oven.
    • Almond flour - Helps create a soft, moist texture while adding protein and healthy fats - perfect for little ones.
    • Oat flour — the base of these muffins, helps add a light structure, keeping the muffins tender while still holding together well.
    • Baking soda & baking powder - work together to give these muffins their lift
    • Salt - just a pinch to balance the sweetness and bring all the flavours together.
    • Blueberries - bursts of sweetness and colour, plus a great source of antioxidants!

    See recipe card for quantities.

    Instructions for Gluten-free Lemon Blueberry Muffins

    Wet ingredients for lemon blueberry muffins added to medium bowl.

    Combine all the wet ingredients in a medium size bowl. (Be sure to zest your lemon before you squeeze the juice out!)

    Step 2 of muffins. Blueberries added into batter in a blue medium sized bowl.

    In a separate bowl, combine the dry ingredients and then add the wet ingredients to the dry ingredients. Stir to combine. Add the blueberries.

    Step 3 of muffins. Batter dished out in mini muffin baking pan.

    Scoop the batter out into a mini muffin tray.

    Finished muffins on a white plate.

    Bake in the oven according to directions below. Then let cool slightly and enjoy!

    Variations

    • Boost the iron content: Iron is an important mineral for children. An easy way to boost the iron content is swapping out ¼ cup of the oat flour for ¼ cup of fortified infant cereal.
    • These muffins are a gluten-free version, but you could use regular flour if you prefer.

    Equipment

    • Muffin pan
    • Two medium size bowls
    • Zester

    Storage

    Store in the fridge in an airtight container for 3-4 days or in the freezer in a sealed bag or container for up to 3 months.

    Delicious Lemon Blueberry Muffins - Perfect for Toddlers!

    Lemon blueberry mini muffins on cooling tray.

    Toddler Tip


    Use a mini muffin pan to make these bite-sized and perfect for little hands! Toddlers just love a mini version - it makes snack time that much more fun!

    FAQ

    Can I use frozen blueberries?

    Yes! No need to thaw them - just mix them in frozen to prevent the batter from going blue.

    Can I make these baby friendly?

    Yes. Just swap out the maple syrup and use unsweetened applesauce instead.

    How do I serve these muffins to a baby doing baby-led weaning (BLW)?

    Muffins are great for baby-led weaning since they are soft, moist texture, and easy for babies to pick up. For babies just starting their baby-led weaning journey, you can serve the mini muffin, or if they are larger muffins, serve large chunks. As your baby gets older and can use their pincer grasp, you can serve the muffins broken into smaller pieces.

    Recipe

    lemon blueberry muffins on white plate with cut up lemon.

    Lemon Blueberry Muffins (gluten free!)

    These lemon blueberry muffins are bursting with citrus flavour and have a soft fluffy texture! They are easy to make and kid-friendly!
    5 from 1 vote
    Print Pin
    Course: Breakfast, Snack
    Keyword: gluten-free, muffins, snack, toddlersnack
    Prep Time: 10 minutes minutes
    Cook Time: 20 minutes minutes
    Total Time: 30 minutes minutes
    Servings: 24 mini muffins
    Calories: 92kcal
    Author: Ali Ellis, MSc., RD
    Prevent your screen from going dark

    Equipment

    • 1 medium bowl
    • 1 muffin pan

    Ingredients

    Wet Ingredients

    • 2 eggs
    • ¼ cup maple syrup
    • 2 tbsps almond milk or milk of choice
    • ⅓ cup coconut oil
    • zest of one lemon
    • ¼ cup lemon juice
    • 1 teaspoon vanilla

    Dry Ingredients

    • 1½ cup oat flour
    • ½ cup almond flour
    • 1 teaspoon baking powder
    • 1 teaspoon baking soda
    • dash of salt
    • 1½ cup blueberries

    Instructions

    • Heat the oven to 400℉.
    • In a medium bowl, add the wet ingredients (eggs through to vanilla) and whisk together. Be sure to zest the lemon before you squeeze the lemon juice in!
    • In a separate bowl, add the dry ingredients (excluding the blueberries). Stir to combine.
    • Add the wet ingredients to the dry ingredients and stir to combine (don't over stir!). Then fold in the frozen blueberries (or fresh blueberries).
    • Scoop the muffin batter into a muffin tray. I used a mini muffin pan, but you could use a regular sized one if you prefer, see notes below about adjusting cook time. Fill to the top of the muffin pan.
    • Cook in the oven at 400℉ for 5 minutes. Then reduce the heat to 350℉ and cook for 15-20 minutes, until golden brown on top and cooked through.
    • Let cool slightly before removing from the pan. Enjoy!

    Notes

    For mini muffins, cook at 375 degrees F for 15-18 minutes, until golden brown on top and cooked through.

    Nutrition

    Calories: 92kcal | Carbohydrates: 9g | Protein: 3g | Fat: 5g | Saturated Fat: 3g | Polyunsaturated Fat: 0.4g | Monounsaturated Fat: 1g | Trans Fat: 0.002g | Cholesterol: 14mg | Sodium: 40mg | Potassium: 56mg | Fiber: 1g | Sugar: 3g | Vitamin A: 25IU | Vitamin C: 2mg | Calcium: 25mg | Iron: 0.5mg

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    Enter your email and I'll send it straight to your inbox. Plus you'll receive new recipes and feeding tips from me each week!

    Related

    Looking for other recipes like this? Try these:

    • Healthy Lemon Coconut Toddler Breakfast Bar with Yogurt.
      Lemon Coconut Toddler Breakfast Bars (No Added Sugar, Iron-Fortified)
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    • Berry Smoothie Bowl for Toddlers (Thick & Spoon-Friendly)
    • Chunky Monkey Baked Oatmeal (Easy Toddler Breakfast)

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      Healthy Applesauce Cinnamon Muffins for Toddlers (No Added-Sugar)
    • Peanut Butter and Banana Chickpea Muffins on white plate with banana in background.
      Peanut Butter & Banana Chickpea Muffins (no added sugar!)
    • Banana Spinach Toddler Muffins in a bowl on the counter.
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    Comments

    1. Kaila says

      July 24, 2025 at 6:58 pm

      5 stars
      Super easy to make and they turned out great. The whole family loves these!!

    5 from 1 vote

    Hi! I'm Ali.

    Welcome to The Toddler Kitchen, I am so glad you are here! I am a registered dietitian with a master’s of science in health promotion, passionate recipe developer and mama. Feeding kids is hard. It can be stressful.

    Learn more about me →

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